In silico cloning and bioinformatic analysis of PEPCK gene in Fusarium oxysporum

Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. According to the relative conservation of homologous gene, a bioinformatics strategy was applied toclone Fusarium oxysporum phosphoenolpyruvate carboxykinase gene (PEPCK) by blasting search of EST database with homologous gene cDNA of Neurospora crassa and identified. Some characters of the PEPCK that were analyzed and predicted by the tools of bioinformatics in the following aspects include the composition of amino acid sequences, physical and chemical properties, O-glycosylation site, hydrophobicity or hydrophilicity, secondary and tertiary structure of the protein and function. These results showed that the full-length of PEPCK was 1771 bp and it contained a complete ORF (1575 bp), encoded 524 amino acids, which is much conserved in ascomycetes. The calculated molecular weight of PEPCK was 58358.2 Da, theoretical pI of 6.84. It has 20 -helices, 37 sheets, and 12glycosylation sites. It was a hydrophilic and stable protein with active site, ATP -binding site, metalbinding site and substrate-binding site

Cloning and heterologous expression of pro-2127, a gene encoding cold-active protease from Pseudoalteromonas sp. QI-1

The psychrotropic bacterium, Pseudoalteromonas sp. QI-1, which produces extracellular cold-active protease, was isolated from Antarctic seawater. The genomic DNA of this bacterium was used to construct a plasmid genomic library with the goal of screening cold-active protease genes. Gene pro-2127 with an open reading frame of 2127 bp encoding protease PRO-2127 was cloned and sequenced. Alignment of amino acid sequences suggested that the precursor of PRO-2127 was a member of subfamily S8A, and that it might contain four domains: a signal peptide, an N-terminal prosequence, a catalytic domain and a C-terminal extension. Amino acids Asp185, His244 and Ser425 might form a catalytic triad. PRO-2127 showed some structural features common to psychrophilic enzymes, such as a decrease in Arg residues and the Arg/(Arg+Lys) ratio. Heterologous expression of pro-2127 in Escherichia coli BL21 (DE3) by pColdIII was also successfully observed in this study

Analysis of corrections to the eikonal approximation

Various corrections to the eikonal approximations are studied for two- and three-body nuclear collisions with the goal to extend the range of validity of this approximation to beam energies of 10 MeV/nucleon. Wallace's correction does not improve much the elastic-scattering cross sections obtained at the usual eikonal approximation. On the contrary, a semiclassical approximation that substitutes the impact parameter by a complex distance of closest approach computed with the projectile-target optical potential efficiently corrects the eikonal approximation. This opens the possibility to analyze data measured down to 10 MeV/nucleon within eikonal-like reaction models.Comment: 10 pages, 8 figure

Diffusion Based Anti-Interference Joint Modulation in MIMO Molecular Communication

Molecular communication(MC) is a significant technology in the field of nano-biology, which uses molecules as message carriers to transmit information. Diffusion channel model is the most common channel model base on Brownian motion in molecular communication since molecules can diffuse to the destination without the need of extra energy supply. However, the random Brownian motion brings high delay and uncertainty to the communication process and thus modulation methods are required to improve the communication performance. The molecular communication system in the SISO (Single Input Single Output) scenario will be seriously affected by ISI (Inter Symbol Interference). In MIMO(Multi-Input Multi-Output) scenario, since there are multiple transmitters and receivers, in addition to ISI, there will be ILI (Inter Link Interference) as well. At present, most modulations are based on the concentration, type, time and space of molecules and only focus on SISO scenario. In this study, inspired by the MoSK(Molecule Shift Keying) modulation method, we proposed a new joint modulation method for MIMO communication in order to minimize the effect of ISI and ILI. Numerical results show that compared with the current modulation scheme, the proposed scheme allows the MIMO system achieve better BER(Bit error rate) performance and transmission rate

Magnetic Borophenes from an Evolutionary Search

A computational methodology based on ab initio evolutionary algorithms and spin-polarized density functional theory was developed to predict two-dimensional magnetic materials. Its application to a model system borophene reveals an unexpected rich magnetism and polymorphism. A metastable borophene with nonzero thickness is an antiferromagnetic semiconductor from first-principles calculations, and can be further tuned into a half-metal by finite electron doping. In this borophene, the buckling and coupling among three atomic layers are not only responsible for magnetism, but also result in an out-of-plane negative Poisson\u27s ratio under uniaxial tension, making it the first elemental material possessing auxetic and magnetic properties simultaneously

Metabolomics and transcriptomics analyses provide new insights into the nutritional quality during the endosperm development of different ploidy rice

Autotetraploid rice is developed from diploid rice by doubling the chromosomes, leading to higher nutritional quality. Nevertheless, there is little information about the abundances of different metabolites and their changes during endosperm development in autotetraploid rice. In this research, two different kinds of rice, autotetraploid rice (AJNT-4x) and diploid rice (AJNT-2x), were subjected to experiments at various time points during endosperm development. A total of 422 differential metabolites, were identified by applying a widely used metabolomics technique based on LC-MS/MS. KEGG classification and enrichment analysis showed the differences in metabolites were primarily related to biosynthesis of secondary metabolites, microbial metabolism in diverse environments, biosynthesis of cofactors, and so on. Twenty common differential metabolites were found at three developmental stages of 10, 15 and 20 DAFs, which were considered the key metabolites. To identify the regulatory genes of metabolites, the experimental material was subjected to transcriptome sequencing. The DEGs were mainly enriched in starch and sucrose metabolism at 10 DAF, and in ribosome and biosynthesis of amino acids at 15 DAF, and in biosynthesis of secondary metabolites at 20 DAF. The numbers of enriched pathways and the DEGs gradually increased with endosperm development of rice. The related metabolic pathways of rice nutritional quality are cysteine and methionine metabolism, tryptophan metabolism, lysine biosynthesis and histidine metabolism, and so on. The expression level of the genes regulating lysine content was higher in AJNT-4x than in AJNT-2x. By applying CRISPR/Cas9 gene-editing technology, we identified two novel genes, OsLC4 and OsLC3, negatively regulated lysine content. These findings offer novel insight into dynamic metabolites and genes expression variations during endosperm development of different ploidy rice, which will aid in the creation of rice varieties with better grain nutritional quality

Emission of PAHs, NPAHs and OPAHs from residential honeycomb coal briquette combustion

Coal combustion is one of the most significant sources of air pollution in China. In this study, emission factors (EFs) of 15 polycyclic aromatic hydrocarbons (PAHs), 26 nitrated PAHs (NPAHs) and 6 oxygenated PAHs (OPAHs) were determined in five different coals with different geological maturity (vitrinite reflectance <i>R</i>_O = 0.77–1.88%) burned in the form of honeycomb briquettes. The total EFs ranged from 9.82 to 215 mg kg^–1 for PAHs, 0.14 to 1.88 mg kg^–1 for NPAHs and 4.47 to 20.8 mg kg^–1 for OPAHs. Measured EFs and gas-particle partitioning varied depending on the geological maturity. The lowest EFs were found in anthracite. The proportion of PAHs, NPAHs and OPAHs in gaseous phase increasing with increased geological maturity. The coal with higher geological maturity produced more 3-ring PAHs. On the basis of the statistical analysis for the residential sector of China in 2008, PAHs, NPAHs and OPAHs emitted from residential honeycomb coal briquettes were 4.36 Gg, 0.03 Gg and 0.47 Gg in 2007, respectively. By 2020, the emission would decrease to 2.18 Gg, 0.02 Gg and 0.24 Gg for PAHs, NPAHs and OPAHs due to the increasing usage of new energy resources. If only anthracite is used as the residential coal, 93% PAHs, 87% NPAHs and 71% OPAHs would be reduced in 2020